{
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  "Package": "fxTWAPLS",
  "Title": "An Improved Version of WA-PLS",
  "Version": "0.1.3",
  "Authors@R": "c(\nperson(given = \"Mengmeng\",\nfamily = \"Liu\",\nrole = c(\"aut\"),\nemail = \"m.liu18@imperial.ac.uk\",\ncomment = c(ORCID = \"0000-0001-6250-0148\")),\nperson(given = \"Iain Colin\",\nfamily = \"Prentice\",\nrole = \"aut\",\nemail = \"c.prentice@imperial.ac.uk\",\ncomment = c(ORCID = \"0000-0002-1296-6764\")),\nperson(given = \"Cajo J. F.\",\nfamily = \"ter Braak\",\nrole = \"aut\",\nemail = \"cajo.terbraak@wur.nl\",\ncomment = c(ORCID = \"0000-0002-0414-8745\")),\nperson(given = \"Sandy P.\",\nfamily = \"Harrison\",\nrole = \"aut\",\nemail = \"s.p.harrison@reading.ac.uk\",\ncomment = c(ORCID = \"0000-0001-5687-1903\")),\nperson(given = \"Roberto\",\nfamily = \"Villegas-Diaz\",\nrole = c(\"aut\", \"cre\"),\nemail = \"r.villegas-diaz@outlook.com\",\ncomment = c(ORCID = \"0000-0001-5036-8661\")),\nperson(\"SPECIAL Research Group @ University of Reading\", role = c(\"cph\")))",
  "Description": "The goal of this package is to provide an improved version\nof WA-PLS (Weighted Averaging Partial Least Squares) by\nincluding the tolerances of taxa and the frequency of the\nsampled climate variable. This package also provides a way of\nleave-out cross-validation that removes both the test site and\nsites that are both geographically close and climatically close\nfor each cycle, to avoid the risk of pseudo-replication.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "URL": "https://github.com/special-uor/fxTWAPLS/,\nhttps://special-uor.github.io/fxTWAPLS/,\nhttps://research.reading.ac.uk/palaeoclimate/",
  "BugReports": "https://github.com/special-uor/fxTWAPLS/issues/",
  "Roxygen": "list(markdown = TRUE)",
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  "Language": "en-GB",
  "Config/pak/sysreqs": "make",
  "Repository": "https://special-uor.r-universe.dev",
  "Date/Publication": "2024-06-25 11:01:45 UTC",
  "RemoteUrl": "https://github.com/special-uor/fxtwapls",
  "RemoteRef": "HEAD",
  "RemoteSha": "09f8720cb361782f8a41715e970dd5ba49507ad9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 08:36:25 UTC",
    "User": "root"
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  "Author": "Mengmeng Liu [aut] (ORCID: <https://orcid.org/0000-0001-6250-0148>),\nIain Colin Prentice [aut] (ORCID:\n<https://orcid.org/0000-0002-1296-6764>),\nCajo J. F. ter Braak [aut] (ORCID:\n<https://orcid.org/0000-0002-0414-8745>),\nSandy P. Harrison [aut] (ORCID:\n<https://orcid.org/0000-0001-5687-1903>),\nRoberto Villegas-Diaz [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5036-8661>),\nSPECIAL Research Group @ University of Reading [cph]",
  "Maintainer": "Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>",
  "MD5sum": "33137fafb04f390a1dab4354aa7816a8",
  "_user": "special-uor",
  "_type": "src",
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  "_published": "2026-05-31T08:39:59.086Z",
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    "description": "Plant-powered 🌱 data enthusiast",
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  "_updates": [],
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    "extra/citation.json",
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    "fx_pspline",
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    "get_pseudo",
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    "plot_residuals",
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    "rand.t.test.w",
    "sse.sample",
    "TWAPLS.predict.w",
    "TWAPLS.w",
    "TWAPLS.w2",
    "WAPLS.predict.w",
    "WAPLS.w",
    "WAPLS.w2"
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    {
      "page": "cv.pr.w",
      "title": "Pseudo-removed leave-out cross-validation",
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        "cv.pr.w"
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    {
      "page": "cv.w",
      "title": "Leave-one-out cross-validation",
      "topics": [
        "cv.w"
      ]
    },
    {
      "page": "fx",
      "title": "Get frequency of the climate value",
      "topics": [
        "fx"
      ]
    },
    {
      "page": "fx_pspline",
      "title": "Get frequency of the climate value with p-spline smoothing",
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        "fx_pspline"
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      "page": "get_distance",
      "title": "Get the distance between points",
      "topics": [
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      ]
    },
    {
      "page": "get_pseudo",
      "title": "Get geographically and climatically close sites",
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    },
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      "page": "pb",
      "title": "Show progress bar",
      "topics": [
        "pb"
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      "title": "Plot the residuals",
      "topics": [
        "plot_residuals"
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    },
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      "title": "Plot the training results",
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      "title": "Random t-test",
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      "title": "Calculate Sample Specific Errors",
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      "title": "TWA-PLS predict function",
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