Package: fxTWAPLS 0.1.3
fxTWAPLS: An Improved Version of WA-PLS
The goal of this package is to provide an improved version of WA-PLS (Weighted Averaging Partial Least Squares) by including the tolerances of taxa and the frequency of the sampled climate variable. This package also provides a way of leave-out cross-validation that removes both the test site and sites that are both geographically close and climatically close for each cycle, to avoid the risk of pseudo-replication.
Authors:
fxTWAPLS_0.1.3.tar.gz
fxTWAPLS_0.1.3.zip(r-4.7)fxTWAPLS_0.1.3.zip(r-4.6)fxTWAPLS_0.1.3.zip(r-4.5)
fxTWAPLS_0.1.3.tgz(r-4.6-any)fxTWAPLS_0.1.3.tgz(r-4.5-any)
fxTWAPLS_0.1.3.tar.gz(r-4.7-any)fxTWAPLS_0.1.3.tar.gz(r-4.6-any)
fxTWAPLS_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fxTWAPLS/json (API)
NEWS
| # Install 'fxTWAPLS' in R: |
| install.packages('fxTWAPLS', repos = c('https://special-uor.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/special-uor/fxtwapls/issues
Pkgdown/docs site:https://special-uor.github.io
Last updated from:09f8720cb3. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 124 | ||
| source / vignettes | OK | 161 | ||
| linux-release-x86_64 | OK | 124 | ||
| macos-release-arm64 | OK | 179 | ||
| macos-oldrel-arm64 | OK | 123 | ||
| windows-devel | OK | 131 | ||
| windows-release | OK | 72 | ||
| windows-oldrel | OK | 81 | ||
| wasm-release | OK | 114 |
Exports:cv.pr.wcv.wfxfx_psplineget_distanceget_pseudopbplot_residualsplot_trainrand.t.test.wsse.sampleTWAPLS.predict.wTWAPLS.wTWAPLS.w2WAPLS.predict.wWAPLS.wWAPLS.w2
Dependencies:ashbitopsbootcliclustercodetoolscolorspacecpp11data.tabledigestdoFuturedotCall64farverfdsfieldsFNNforeachfuturefuture.applygeosphereggplot2globalsgluegtablehdrcdeisobanditeratorsJOPSkernlabKernSmoothkslabelinglatticelifecyclelistenvlocfitmapsMASSMatrixmclustmgcvmulticoolmvtnormnlmeparallellypcaPPpracmaprogressrR6rainbowRColorBrewerRcppRCurlrlangrpartS7scalesspamSpATSvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Pseudo-removed leave-out cross-validation | cv.pr.w |
| Leave-one-out cross-validation | cv.w |
| Get frequency of the climate value | fx |
| Get frequency of the climate value with p-spline smoothing | fx_pspline |
| Get the distance between points | get_distance |
| Get geographically and climatically close sites | get_pseudo |
| Show progress bar | pb |
| Plot the residuals | plot_residuals |
| Plot the training results | plot_train |
| Random t-test | rand.t.test.w |
| Calculate Sample Specific Errors | sse.sample |
| TWA-PLS predict function | TWAPLS.predict.w |
| TWA-PLS training function | TWAPLS.w |
| TWA-PLS training function v2 | TWAPLS.w2 |
| WA-PLS predict function | WAPLS.predict.w |
| WA-PLS training function | WAPLS.w |
| WA-PLS training function v2 | WAPLS.w2 |
